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ALS News
Contents
Volume 252 • April 27, 2005
ALSNews is a monthly electronic newsletter to keep users and other interested parties informed about developments at the Advanced Light Source, a national user facility located at Lawrence Berkeley National Laboratory, University of California. We welcome suggestions for topics and content.
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Safety incidents prompt
all-hands meeting

Stop, Think, ActResponding to a recent increase in safety incidents, the ALS held a mandatory safety meeting for all ALS staff including those who are matrixed. Acting Director Janos Kirz stressed that the common thread through most of the accidents appears to be carelessness and asked for suggestions to elevate safety awareness, especially with the pending installation shutdown. Many insightful suggestions were made and will be reviewed. As an immediate response, the subproject leaders and section leaders have begun holding briefings at the end of the work day. This will allow them to discuss the safety implications of the plans for the following day and transmit any safety concerns/lessons learned generated by that day's work. First thing the next morning, the section leaders will meet with their staff and go over the safety issues and plans, as well as any safety concerns from the previous day. We believe these meetings will help keep safety in the forefront of everyone's mind, especially during the busy shutdown.

Contact: Georgeanna Perdue, GMPerdue@lbl.gov

Electron trapping by
molecular vibration

by Lori Tamura

In photoelectron spectroscopy experiments performed at the ALS, a group of researchers has found that electronic transitions normally thought to be forbidden can in fact be excited in conjunction with certain types of molecular vibrations. Specifically, they found that when the symmetry of a linear triatomic molecule is broken by asymmetric vibrational modes, photoelectrons can become temporarily trapped by the molecule before ultimately escaping, giving rise to a broad feature in the photoelectron spectrum known as a shape resonance. This process represents a novel type of symmetry-breaking phenomenon that has not been observed previously but appears to be widespread. Such coupling between electronic motion and nuclear motion becomes increasingly important as scientists learn more about the geometry and dynamics of novel chemical structures such as those found in nanodevices and transient chemical species, and the results have implications for studies that use photoelectron spectroscopy as a diagnostic tool. Full story.

Vibrationally Trapped

Publication about this research: G.J. Rathbone, E.D. Poliakoff, J.D. Bozek, and R.R. Lucchese, "Observation of the symmetry-forbidden 5σu → kσu CS2 transition: A vibrationally driven photoionization resonance," Phys. Rev. Lett. 92, 143002 (2004).

Contact: Erwin Poliakoff, epoliak@lsu.edu

Influence of topological spin
fluctuations on charge transport

by Art Robinson

Layered transition metal oxides are the focus of intense research efforts because they might clarify the superconducting mechanism of cuprate high-temperature superconductors (HTSCs). A case in point is NaxCoO2 with x = 0.7, which is a parent compound for a family of cobaltites that exhibits superconductivity. This class of materials is also thought to be ideal for detecting the long-sought resonating valence bond (RVB) state of matter proposed by Philip Anderson of Princeton University in 1973. Researchers from Princeton and the ALS are the first to use angle-resolved photoemission spectroscopy (ARPES) to demonstrate the strongly electron correlated nature of this material and to provide evidence that charge transport is strongly influenced by topological spin frustration. Full story.

Frustrated Spins

Publication about this research: M.Z. Hasan, Y.-D. Chuang, D. Qian, Y.W. Li, Y. Kong, A. Kuprin, A.V. Fedorov, R. Kimmerling, E. Rotenberg, K. Rossnagel, Z. Hussain, H. Koh, N.S. Rogado, M.L. Foo, and R.J. Cava, "Fermi surface and quasiparticle dynamics of Na0.7CoO2 investigated by angle-resolved photoemission spectroscopy," Phys. Rev. Lett. 92, 246402 (2004).

Contact: M.Zahid Hasan, mzhasan@princeton.edu

A new guide to exploring
the protein universe

by Lynn Yarris

Proteins are the building blocks of living cells and control the chemical processes that keep those cells alive and functioning. Based on the total number of known life forms on Earth, it is estimated that there are some 50 billion different types of proteins in existence today, and it is possible that the protein universe could hold many trillions more. How, then, does a scientist know where to find the most densely populated (hence most promising) regions of protein space to explore? Help is on the way in the form of a comprehensive new 3-D map that brings order to the protein universe through a manageable organization.

Proteins as galaxies

"We have constructed a protein-structure space map (SSM) based on the distribution in 3-D space of the 1,898 known unique protein structures," says Sung-Hou Kim, a chemist who holds a joint appointment with Berkeley Lab's Physical Biosciences Division and University of California, Berkeley's Chemistry Department. "Because proteins with similar structures and functions are clustered together in the SSM, when the structure of a new protein is first identified it can be placed in the appropriate location on the map to reveal its neighbors and its evolutionary history. This information can then be used to predict the protein's function, especially when the prediction is not possible based on the protein sequence alone."

While the construction of the SSM was a computational tour-de-force, the data on which the analysis was based came from the Protein Data Bank, an international repository of protein structure data with substantial contributions from light sources. Says Kim, "the availability of the structures that we borrowed from the Protein Data Bank is largely dependent on synchrotron light sources like the ALS." Full story.

Contact: Sung-Hou Kim, SHKim@lbl.gov

UEC Corner: Notes from the Users'
Executive Committee

by Greg Denbeaux

Greg DenbeauxThanks to everyone who took a couple of minutes and responded to my recent email to take action and help the ALS. If you have not done so already, please look at the UEC website and click on the "Take Action" button.

The next UEC meeting will be held on Friday, May 6th. All interested users are welcome to participate, so please let me know if you want more information about the meeting. Our topics of discussion will include the user housing issue and planning for the upcoming ALS Users' Meeting on October 20–21.

(Contact: Greg Denbeaux, GDenbeaux@uamail.albany.edu)

2005 shutdown features
IVID installation

The annual ALS shutdown for maintenance and installation work is well underway, having begun on April 11 as scheduled. We have already installed an in-vacuum insertion device (IVID), the first of its kind at the ALS, in Sector 6. The IVID is an undulator whose magnets are inside the vacuum chamber, enabling smaller gap distances and thus, higher magnetic fields. It will be used by the femtosecond beamline (6.0.1), currently under construction. In addition, a newly machined vacuum chamber with elliptically polarizing undulator (EPU) trim coils has been installed in Sector 4, in anticipation of a new EPU for the ultrahigh-energy-resolution MERLIN beamline (4.0.1), currently in the design stage.

IVID installation

Installation of the in-vacuum insertion device.

A full survey of the storage ring has been performed. It was decided to forgo a girder-based alignment this year, in favor of focusing on correcting long-term misalignment issues with individual sextupole and bend magnets. Also, higher-order-mode (HOM) dampers are being installed in the main rf cavities.

We anticipate handing the accelerator over on time to the Accelerator Physics Group over the weekend of May 7 for them to begin their start-up and tune efforts. Nine shifts of beamline commissioning time are scheduled to follow, with user shifts resuming on May 18.

Contact: Steve Rossi, SLRossi@lbl.gov

Synchrotron techniques
on BES site

Office of Basic Energy SciencesThe U.S. Department of Energy's Office of Basic Energy Sciences (BES) has posted on its Web site a summary of the various beamline techniques that are practiced at synchrotron radiation facilities along with some representative examples of research accomplishments using these techniques. The site was assembled in conjunction with a report being prepared by an Interagency Working Group (IWG) for the Office of Science and Technology Policy (OSTP) on synchrotron light sources in the United States. The ALS was commissioned to condense the large amount of material that had been submitted and to edit it into a form that would be understandable to a lay person with a moderate science background. The final result consists of 44 examples organized under 12 techniques that fall into three basic categories: spectroscopy, scattering, and imaging. I am grateful to all who have contributed, and especially to members of the ALS Technical Information Section who produced the site on the desired short time scale.

Contact: Neville Smith, NVSmith@lbl.gov

Latest proposal scores
posted online

The general sciences beam time allocation process for the running period from July through December 2005 is complete. The number of proposals for the cycle was 310, up from 248 in the previous period. The number of eight-hour shift requests for the upcoming cycle was 5932. A total of 2769 shifts, equal to about 46% of the total time requested in the proposals, was allocated. Competition for beam time on insertion-device beamlines was especially keen—general users requesting beam time on the insertion-device beamlines will continue to find the proposal process competitive; excluding protein crystallography, approximately 31% of the requested beam time was allocated. For more detailed results, including beam-time score distributions and cut-off scores, go to the proposal scores Web page. The schedule for the upcoming running period has also been posted.

Contact: Gary Krebs, GFKrebs@lbl.gov

In Memoriam: Joan Minton

Joan MintonA longtime member of the ALS family, Joan Portello Minton, passed away peacefully at home on March 26, 2005, after a long illness. Joan began her Berkeley Lab career in 1993, when she was hired as an administrative assistant at the ALS. During her tenure here she provided valuable support to both the Experimental Systems and the Scientific Support groups and to ALS Deputies Ben Feinberg and Neville Smith. She was quickly recognized for her exceptional writing ability and received an Outstanding Performance Award for her work on the ALS Users' Guide, a publication that received an international Distinguished Technical Communication Award. In 1999, Joan accepted a new assignment within Berkeley Lab's Physical Biosciences Division, coordinating and developing research and grant proposals. Joan was dedicated to her job, to those she supported at the ALS, and to the ALS as a whole. She was a role model of reliability, work ethic, communication, and willingness to grow and accept new responsibilities. All who knew her were touched by her generosity, creativity, and ability to enjoy life as it comes. A scholarship fund has been set up in Joan's name; contributions may be sent to A.U.H.S.D. / Joan Minton Scholarship Fund, 1212 Pleasant Hill Rd., Lafeyette, CA 94549.

 

Safety incidents prompt all-hands meeting

Electron trapping by molecular vibration

Influence of topological spin fluctuations on charge transport

A new guide to exploring the protein universe

UEC Corner: Notes from the Users' Executive Committee

2005 shutdown features IVID installation

Synchrotron techniques on BES site

Latest proposal scores posted online

In Memoriam: Joan Minton

 
Operations

RING STATUS

SCHEDULES

For the user runs from March 29–April 10:

Beam reliability*: 99.7%

Completion**: 97.5%

There were no significant outages.

*Time delivered/time scheduled
**Percent of scheduled beam delivered without interruption

The ALS shut down at 8:00 A.M. on Monday, April 11, for planned installations and maintenance. User operations will resume at 12:00 A.M. on Wednesday, May 18.

Requests for special operations use of the "scrubbing" shift should be sent to Jan Pusina (ALS-CR@lbl.gov, x4738) by 1:00 p.m. Friday.

The Accelerator Status Hotline at (510) 486-6766 (ext. 6766 from Lab phones) features a recorded message giving up-to-date information on the operational status of the accelerator.

More Info

To subscribe/unsubscribe, email ALSNews@lbl.gov.

PREVIOUS ISSUES

EDITORS
Lori Tamura
Art Robinson
Liz Moxon

DESIGNER
Greg Vierra

LBNL/PUB-889 (2005)

This work was supported by the Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC03-765F00098. Disclaimer.