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ALS News
Contents
Volume 270 • October 25, 2006
ALSNews is a monthly electronic newsletter to keep users and other interested parties informed about developments at the Advanced Light Source, a national user facility located at Lawrence Berkeley National Laboratory, University of California. We welcome suggestions for topics and content.
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2006 Users' Meeting: Topping off
an eventful year

In recent months, the ALS has, among other things, welcomed a new director, mourned the loss of a dear friend, dealt with safety issues, and celebrated a user's Nobel Prize. Following such an eventful period, it is no wonder that the 2006 ALS Users' Meeting, held October 9–11, was filled from beginning to end with well-attended, wide-ranging sessions reflecting the intensity and diversity of interests found in the ALS community. As always, science was the primary focus, with 12 workshops, 6 research highlights, an evening public science lecture, and a keynote session featuring talks about the Molecular Foundry, coherent scattering, and the NASA Stardust project. In addition, organizers this year included two special sessions: one showcasing talks by the Halbach, Shirley, and student poster award winners and a second devoted to remembering ALS Scientific Director Neville Smith. Congratulations and thanks go to program co-chairs Elke Arenholz and Hendrik Ohldag for pulling it all together.

Photo of poster session

Users talk shop and socialize during the
combination poster session and vendor reception.

Berkeley Lab Deputy Director Graham Fleming welcomed attendees, giving a quick review of recent events, including the sudden loss of Neville Smith and the announcement of user Roger Kornberg's Nobel Prize in Chemistry. Fleming then introduced Robert Birgeneau, now Chancellor of the Berkeley campus of the University of California (UC). In 1997, Birgeneau chaired a Department of Energy (DOE) panel that gave a mixed review of the ALS. Now, however, Birgeneau proclaimed the ALS to be the country's "flagship synchrotron" facility, crediting its management and scientists with an extraordinary turnaround.

Robert Birgeneau

Robert Birgeneau addresses the opening-session crowd.

ALS Director Roger Falcone then stepped up to the podium to deliver his first state-of-the-ALS address. Appointed just a month earlier, he gave a comprehensive overview of organizational changes, infrastructure developments, operational and science highlights, and the next steps toward realization of the ALS Strategic Plan. Pat Dehmer (DOE Associate Director of Science for Basic Energy Sciences) and Michael Lubell (Director of Public Affairs, American Physical Society) painted a cautiously optimistic picture for DOE science in 2007, which they attributed to many years of planning and preparation, culminating in the announcement of the President's American Competitiveness Initiative in the 2006 State of the Union address.

ALS managers David Robin, Ben Feinberg, and Gary Krebs brought users up to date on operations, safety, and the construction of the user support building and guest house. Users' Executive Committee (UEC) chair Clemens Heske then led a town hall meeting covering topics ranging from the safety responsibilities of beamline scientists to preferred floor plans in the user guest house. The first day of the meeting closed with a session devoted to "Remembering Neville Smith," with invited speakers Peter Johnson, Stephen Kevan, Z.Q. Qiu, and Z.X. Shen reflecting on Neville's contributions to photoemission science. Later, during Tuesday evening's banquet on the ALS patio, an open microphone provided the opportunity to hear many funny and moving tributes to Neville. A champagne toast, led by Peter Johnson, capped the evening.

Toast to Neville Smith

Peter Johnson leads a toast to Neville Smith.

The presentation of UEC awards was another highlight of the meeting. The Halbach Award for innovative instrumentation was won by Carl Cork and John Taylor (Physical Biosciences Div.); Robert Nordmeyer, Earl Cornell, and Jim O'Neill (Engineering Div.); and Gyorgy Snell (Takeda San Diego) for the development of automated crystal-mounting robots for high-throughput macromolecular crystallography. The Shirley Award for scientific achievement went to Andreas Scholl (ALS) and Hendrik Ohldag (Stanford Synchrotron Radiation Laboratory) for their outstanding work in using photoemission electron microscopy in the study of magnetic materials. The Renner User Service Award went to Warren Byrne for his exceptional efforts in providing the highest quality beam and assistance to ALS users. The first-place student poster award went to Rajesh Chopdekar (Cornell Univ.), second place went to Regan Wilks (Univ. of Saskatchewan), and third place went to Geza Szigethy (UC Berkeley). For more about the science presentations (including slides) and workshops, see the Users' Meeting Web site.

ALS user Roger Kornberg
wins Chemistry Nobel

Roger KornbergProteins are the nanosized gears and building blocks of life, and to solve the mystery of how life works, one must first understand how proteins work. ALS protein crystallography beamlines have played a major role in fundamental discoveries involving protein form and function. ALS user Roger Kornberg (Stanford Univ.), who won this year's Nobel Prize in Chemistry "for his studies of the molecular basis of eukaryotic transcription," did his prize-winning research at the Stanford Synchrotron Radiation Laboratory and the ALS. Kornberg used the crystallography facilities at Beamlines 5.0.2 and 8.2.1 to identify some of the substructures of RNA polymerase in action, the protein that converts DNA into RNA through the process known as transcription. Kornberg and his group were among the first to capitalize on the crystal automounter robots at Beamline 5.0.2, which enabled them to screen numerous crystals to find the best. Members of the Kornberg group are still regular visitors to the beamlines at the ALS. In fact, on the day of the announcement, Henrik Spahr and Guillermo Calero, postdocs in the Kornberg group, were back at Beamline 8.2.1, as scheduled, to continue the group's work on RNA polymerase.

Stanford press release
Starting the RNA Assembly Line
Enzyme Structure Provides Clues to DNA Transcription Details

Users' Executive Committee
elections begin October 27

It's time again to select new members for the ALS UEC. This year, three new members will be elected to replace retiring members Greg Denbeaux, Ed Westbrook, and Corie Ralston. Nominees for this year's election include Anton Barty (Lawrence Livermore National Laboratory), Ken Goldberg [Center for X-Ray Optics (CXRO)], Peter Fischer (CXRO), Jay Nix (Molecular Biology Consortium), Paulo Monteiro (UC Berkeley), Chang Chang (Drexel Univ.), Marc David Whitlow (Berlex Biosciences), and Franz Himpsel (Univ. of Wisconsin, Madison). To find out more about the nominees, view their biographies, research interests, and candidate statements.

VOTE

The election will be conducted online beginning Friday, October 27; on or after that date, go to the log-in page to vote. Members of the ALS user community must have a valid email address and Berkeley Lab employee idenification number. Voters are also asked to consider the proposed changes to the UEC charter and vote either YES or NO to accepting all (or none) of the changes. The current and revised versions of the charter can be viewed on the UEC voting Web site.

Contact: Clemens Heske, heske@unlv.nevada.edu

National Center For X-Ray Tomography
beamline dedicated

The National Center for X-Ray Tomography (NCXT) beamline (Beamline 2.1) was officially dedicated at the ALS on October 11. A ribbon-cutting ceremony and tour was held in conjunction with a workshop on tomography organized as part of the ALS Users' Meeting. Among those on hand to participate in the ceremonies were Graham Fleming, Deputy Director of Berkeley Lab; Roger Falcone, ALS Director; Roland Hirsch, of the Biological and Environmental Research (BER) program in the DOE Office of Science; Amy Swain and Barbara Alving, of the National Center for Research Resources program in the National Institutes of Health (NIH); Allan Basbaum, chair of the Anatomy Department, Univ. of California, San Francisco; and Carolyn Larabell and Mark Le Gros, NCXT principal and co-principal investigators.

Ribbon-cutting ceremony

Cutting the ribbon that officially opened the new National Center for X-Ray Tomography were Roland Hirsch, Allan Basbaum, Carolyn Larabell, Barbara Alving, Amy Swain, and Roger Falcone.

The new beamline features a state-of-the art x-ray transmission microscope capable of imaging whole, hydrated biological cells at resolutions of almost 35 nanometers and cellular structures at 25 nanometers. Funded by the DOE and NIH, the NCXT beamline will be available to trained users from across the country.

Berkeley Lab press release
Bringing the Mesoscale Into Focus
NCXT Web site

Contacts: Carolyn Larabell, CALarabell@lbl.gov;
Mark Le Gros, MALeGros@lbl.gov

Protein crystallography undergoes
cross-cutting review

All eight of the ALS macromolecular crystallography beamlines underwent a cross-cutting review this month, in anticipation of the renewal of the beamlines' memoranda of understanding (MOUs) with the ALS. All of the beamlines are independently funded, but nevertheless make some use of ALS local resources. The MOUs spell out terms of operation at the ALS, the beamtime allocation percentages among the PRT and general user groups, and fees charged for proprietary research. The cross-cutting review provided the opportunity to document macromolecular crystallography activity across the board and to update MOU language clarifying the roles and responsibilities of beamline scientists, principal investigators, and users with respect to safety.

In their charge, the review committee was asked to provide advice and recommendations on topics such as beamline productivity, impact and importance of the work, effectiveness of beamline management, optimization of beam time, relative funding scenarios, and enhancements required to maintain competiveness five years into the future. The review committee was chaired by Keith Moffat (Univ. of Chicago) and included Jennifer Doudna (UC Berkeley), Michael Soltis (Stanford Synchrotron Radiation Laboratory), Bob Sweet (Brookhaven National Laboratory), and John Quintana (Advanced Photon Source). The beamlines were represented by Paul Adams (5.0.1, 5.0.2, 5.0.3, 8.2.1, 8.2.2), Tom Alber (8.3.1), Edwin Westbrook and Jay Nix (4.2.2), and John Tainer, Greg Hura, and Scott Classen (12.3.1).

Contact: Paul Adams, PDAdams@lbl.gov

Extended Fall shutdown paves
way for top-off upgrade

ALS BeamclockThe ALS Fall 2006 shutdown is now underway. The facility is shut down for two and a half months, starting October 16, to accommodate some extensive work required in preparation for the transition to top-off injection. The main power supplies for the booster bend and quadrupole magnets are being replaced as well as the power supplies for the booster-to-storage ring transfer-line bend magnets. The booster radio frequency (rf) system is also undergoing major upgrades, with the replacement of the transmitter, the associated power supply, and a new transmission line into the booster. Significant changes and upgrades to the control and timing systems are also being done to ensure that all the new equipment works together.

Storage-ring work includes a major upgrade to the the Beamline 5.0 front-end optics, installation of a high-order-mode damper on rf cavity #1, outfitting all sectors with new beam-position monitors, installation of an experimental camshaft bunch kicker, and our annual swap out of the superbend magnet cold heads. User shifts are scheduled to return during the first week of January 2007. The plan is to operate the ALS with full-energy injection shortly after the installation shutdown. We anticipate slowly migrating to full top-off operation during the second half of the 2007 calendar year.

Contacts: Steve Rossi, SLRossi@lbl.gov

 

2006 Users' Meeting: Topping off an eventful year

ALS user Roger Kornberg wins Chemistry Nobel

Users' Executive Committee elections begin October 27

National Center For X-Ray Tomography beamline dedicated

Protein crystallography undergoes cross-cutting review

Extended Fall shutdown paves way for top-off upgrade

 
News Links

Researchers probe the machinery of cellular protein factories

New study shows how genetic repair mechanism helps seal DNA breaks

Berkeley Lab gets $13 million in grants from HHMI and NIH to speed crystal structure solutions

 
Operations

RING STATUS

SCHEDULES

For the user runs from
September 26–October 15:

Beam reliability*: 99.4%

Completion**: 98.6%

There were no significant interruptions.

*Time delivered/time scheduled
**Percent of scheduled beam delivered without interruption

Questions about beam reliability should be sent to Dave Richardson (DBRichardson@lbl.gov).

Requests for special operations use of the "scrubbing" shift should be sent to Rick Bloemhard (ALS-CR@lbl.gov, x4738) by 1:00 p.m. Friday.

More Info

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EDITORS
Lori Tamura
Liz Moxon

DESIGNER
Greg Vierra

LBNL/PUB-948

This work was supported by the Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Disclaimer.